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Preparation of SomaScan meta data

prepare_somascan_meta_data.Rd

Preparation of SomaScan meta data

Usage

prepare_somascan_meta_data(
  data,
  names = c("protein", "id"),
  columns = c("seqid", "somaid", "target_full_name", "target", "uniprot", "organism",
    "type", "dilution"),
  filter = "HumanProtein"
)

Arguments

data

Raw CKB SomaScan meta data (imported from somalogic_meta.rds or somalogic_meta.csv)

names

Naming scheme to use for proteins: "protein" (default) to use target name or "id" to use SomaLogic sequence IDs.

columns

Optional columns to include in the meta data. (Default: c("seqid", "somaid", "target_full_name", "target", "uniprot", "organism", "type", "dilution"))

filter

Filter to apply to rows:

  • "HumanProtein" (default): Only return meta data for aptamers where organism is "Human" and type is "Protein".

  • "All": Return all rows of meta data.