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Preparation of Olink protein data

prepare_olink_data.Rd

Preparation of Olink protein data

Usage

prepare_olink_data(
  data,
  meta_data,
  transform = c("none"),
  qc = c("default", "none"),
  columns = NULL
)

Arguments

data

Raw Olink protein data (imported from data_baseline_olink_explore.rds or data_baseline_olink_explore.csv)

meta_data

Olink meta data produced by prepare_olink_meta_data().

transform

Transformation to apply to protein values. Currently only "none" is available.

qc

QC steps to apply:

  • "default" (default): replace protein values with a QC warning with a missing value

  • "none"

columns

Other columns in raw data to include in output. For example, set to "lod" to include the limit of detection for each protein.